Presentation 1
C. Notredame, "Recent progress in multiple sequence alignment: a survey" Pharmacogenomics, Vol. 3, No. 1 (2002), pp. 131-144.
Multiple Sequence Alignments
Introduces multiple alignments: Algorithms
for Multiple Sequence Alignments
Affine Gap Penalties:
Affine Gap Penalties vs Regular Gap Penalties
Overview:
Types of Multiple Alignment Methods
BAliBASE:
BAliBASE Abstract
Glossary:
NCBI - Glossary
Phylogenetics
Introduces Phylogenetics:
Phylogenetics
*log:
Definitions which distinguish
between Homolog, Ortholog, and Paralog
Example of a simple clustering algorithm:
Construction
of a distance tree using clustering ... (UPGMA).
Bootstrapping:
A brief "as I understand it"
definition of bootstrapping
Glossaries:
EVOLUTION
DISCUSSION GROUP ... : Useful terms
UCMP
Glossary of Natural History Terms
Teaching Animal Molecular Phylogenetics: Glossary