Publications


Refereed Journal Papers

161. JW Luo, JX Wang, Z Zhang, M Li, FX Wu(2016): BOSS: a novel scaffolding algorithm based on an optimized scaffold graph Bioinformatics, Accepted.

160. SQ Jin, FX Wu, XF Zou(2016): Domain control of nonlinear networked systems and applications to complex disease networks, Discrete and Continuous Dynamical System - B, Accepted.

159. BH Zhao, JX Wang, XY Li, FX Wu(2016): Essential Protein Discovery based on a Combination of Modularity and Conservatism, Methods, in press.

158. GS Li, M Li, JX Wang, JL Wu, FX Wu, Y Pan(2016): predicting essential proteins based on subcellular localization, orthology and PPI networks, BMC Bioinformatics, 17(S8): 279, 11 pages

157.JC Zhong, JX Wang, XJ Ding, Z Zhang, J Wang, M Li, FX Wu, Y Pan (2016): PEPPPI: protein inference from the integration of tandem MS data and PPI networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics, accepted.

156. M Li,Y Tang, XH Wu,JX Wang, FX Wu, Y Pan (2016): C-DEVA: detection, evaluation, visualization and annotation of clusters from biological networks, Biosystems, 150: 78-86.

155. Y Yan, AJ Kusalik, and FX Wu(2016): De novo Peptide Sequencing using CID and HCD Spectra Pairs, Proteomics, in press.

154. XQ Peng, JX Wang, W Peng, FX Wu, Y Pan (2016): Protein-Protein Interactions: Reliability Assessment and Applications, Briefings in Bioinformatics, in Press.

153. W Lan, JX Wang, M Li, J Liu, FX Wu, Y Pan (2016): Predicting microRNA-disease associations based on microRNA and disease similarity, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Accepted.

152. XJ Lei, YL Ding, FX Wu(2016): Detecting Protein Complexes on Dynamic Protein-protein Interaction Networks by Combing Density Based Clustering with Pigeon-Inspired Optimization Algorithm, China Science Information Science,Vol. 59 070103: 14 pages.

151. HM Luo, JX Wang, M Li 1, JW Luo, XQ Peng, FX Wu, Y Pan(2016): Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm, Bioinformatics, 32(17): 2664-2671

150. XY Li, JX Wang, BH Zhao, FX Wu, Y Pan(2016): Identification of protein complexes from multi-relationship protein interaction network, Human Genomics, 10(S2) 17: 10 pages

149. HY Wang, HR Zheng, JX Wang, CY Wang, FX Wu(2016): Integrating Omic Data with a Multiplex Network-based Approach for the Identification of Cancer Subtypes, IEEE Transactions on Nanobioscience, 15(4): 335-342

148. BL Chen, XQ Shang, M Li, JX Wang, FX Wu(2016): Identifying individual-cancer-related genes by re-balancing the training samples, IEEE Transactions on Nanobioscience, 15(4): 309-315

147. W Lan, JX Wang, Min Li, RQ Zheng, FX Wu, and Y Pan(2016): Predicting drug-target interaction based on sequence and structure information, Neurocomputing, 206(2016): 50-57.

146. BH Zhao, JX Wang, M Li, XY Li, YH Li, FX Wu, and Y Pan(2016): A new method for predicting protein functions from dynamic weighted interactome networks, IEEE Transactions on Nanobioscience, 15(2): 131-139

145. W Peng, JX wang, Z Zhang, and FX Wu (2016): Applications of Random Walk Model on Biological Networks, Current Bioinformatics, 11(2): 211-220

144. M Li, RQ Zheng, Q Li, JX Wang, FX Wu, and ZH Zhang (2016): Prioritizing disease denes by using search engine algorithm, Current Bioinformatics, 11(2):195-202

143. XQ Peng, JX Wang, J Huan, FX Wu (2016): Double-layer clustering method to predict protein complexes based on power-law distribution and protein sublocalization, Journal of Theoretical Biology, 395: 186-193.

142. Z Zhang, JX Wang, JW Luo, XJ Ding, JC Zhong, J Wang, FX Wu, Yi Pan (2016): Sprites: detection of deletions from low-coverage sequencing data by re-aligning split reads, Bioinformatics, 32(12):1788-1796.

141. L Wu, M Li, JX Wang, and FX Wu(2016): The minimum structural controllability of complex networks and its application to biomelecular networks, IET Systems Biology, 10(3):116-123

140. XJ Lei, F Wang, FX Wu, AD Zhang, W Pedrycz (2016): Protein complex identification through MCL with firefly swarm optimization method from dynamic PPI networks, Information Sciences, 329: 303-316

139. W Lan, JX Wang, M Li, W Peng, and FX Wu (2015): Computational Approaches for Prioritizing Candidate Disease Genes Based on PPI Networks, TSINGHUA SCIENCE AND TECHNOLOGY, 20(5): 500-512

138. Y Yan, AJ Kusalik, FX Wu (2015): Recent development of computational methods for de novo peptide sequencing via tandem mass spectrometry (MS/MS), Protein and Peptide Letters, 22(11): 983-991.

137. JW Luo, JX Wang, Z Zhang, FX Wu, M Li, and Y Pan(2015): EPGA2: memory-efficient de novo assembler, Bioinformatics, 31 (24): 3988-3990

136. DJ Wang, SQ Jin, FX Wu, and XF Zou (2015): Estimation of control energy and control strategies for complex networks, Advances in Complex Systems, accepted

135. BL Chen, M Li, JX Wang, XQ Shang, and FX Wu(2015): A fast and high performance algorithm for identifying human disease genes, BMC Medical Genomics: 8(S3-S2): 1-11.

134. W Peng, JX Wang, FX Wu, Y Pan(2015): Detecting conserved protein complexes using a dividing-and-matching algorithm and unequally lenient criteria for network comparison, Algorithms for Molecular Biology, 10(21): 1-17.

133. XQ peng, JX Wang,J Wang, FX Wu, Y Pan(2015): Rechecking Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks PLoS ONE, 10(6): e0130743, 22 pages

132. Y Yan, AJ Kusalik, FX Wu(2015): A framework of De novo peptide sequencing with multiple tandem mass spectra, IEEE Transactions on Nanobioscience, 14(4): 478-484

131. Y Yan, AJ Kusalik, FX Wu (2015): NovoExD: De novo peptide sequencing for ETD/ECD spectra, IEEE/ACM Transactions on Computational Biology and Bioinformatics, in press.

130. M Li, Y Lu, ZB Niu, FX Wu (2015): United complex centrality for identification of essential proteins from PPI networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics, in press.

129. JX Wang, JC Zhong, G Chen, M Li, FX Wu, Y Pan(2015): ClusterViz: a CytoscapeAPP for Cluster Analysis of Biological Network, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 12(4): 815-822.

128. L Wu, YC Shen, M Li, and FX Wu(2015): Network Output Controllability-Based Method for Drug Target Identification, IEEE Transactions on Nanobioscience, 14(2): 184-191.

127. XJ Ding, HH Gu, Z. Zhang, M Li, FX Wu(2015): Searching SNP combinations related to evolutionary information of human populations on Hapmap data, IEEE Transactions on Nanobioscience, 14(2): 220-228.

126. Y Tang, M Li,JX Wang, Y Pan, FX Wu (2015): CytoNCA: a cytoscape plugin for centrality analysis and evalua-tion of protein interaction networks, Biosystems: 127: 67-72.

125. QH Xiao,JX Wang, XQ Peng, FX Wu Y Pan (2015): Identifying essential proteins from active PPI networks constructed with dynamic gene expression, BMC Genomics: 16(S3-S1): 1-10.

124. XJ Lei, C Ying, FX Wu, and J Xu (2015): Clustering PPI data by combining FA and SHC method, BMC Genomics: 16(S3-S3): 1-12.

123. JW Luo, JX Wang, Z Zhang, FX Wu, Yi Pan(2015): EPGA: de novo assembly using the distributions of reads and insert size, Bioinformatics, 31(6): 825-833.

122. M Li, Y Lu, JX Wang, FX Wu, and Y Pan(2015): A topology potential-based method for identifying essential proteins from PPI networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 12(2): 372-383

121. W Peng, JX Wang, YJ Cheng, L Lu, FX Wu, Y Pan (2015): UDoNC: An algorithm for identifying essential proteins based on protein domains and protein-protein interaction networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 12(2): 276-288.

120. LZ Liu, FX Wu, and WJ Zhang (2015): Properties of Sparse Penalties on Inferring Gene Regulatory Networks from Time-course Gene Expression data, IET Systems Biology, 9(1): 16-24.

119. J Liu, M Li, JX Wang, FX Wu,TM Liu, and Y Pan(2014): A survey of MRI-Based Brain Tumor Segmentation methods, TSINGHUA SCIENCE AND TECHNOLOGY, 19(6): 578-595

118. M Li, Q Li, GU Ganegoda, JX Wang, FX Wu, Y Pan (2014): Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks, Science China Life Sciences: 57(11): 1064-1071

117. GU Ganegoda, JX Wang, FX Wu, M Li (2014): Prediction of disease genes using tissue-specified gene-gene network, BMC Systems Biology, 8(S3-S3): 1-9.

116. LZ Liu, FX Wu, and WJ Zhang (2014): A Group LASSO-Based Method for Robustly Inferring Gene Regulatory Networks from Multiple Time-Course Datasets, BMC Systems Biology, 8(S3-S1): 1-12.

115. BL Chen, JX Wang, M Li, FX Wu (2014): Identifying disease genes by integrating multiple data sources, BMC Medical Genomics, 7(S2-S2): 1-12.

114. M Li, J Zhang, Q Liu, JX Wang, FX Wu (2014): Prediction of disease-related genes based on weighted tissue-specific networks by using DNA methylation, BMC Medical Genomics: 7(S2-S4): 1-8.

113. BL Chen, M Li, JX Wang, and FX Wu (2014): Disease gene identification by using graph kernels and Markov random fields, Science China Life Sciences: 57(11): 1054-1063.

112. BH Zhao, JX Wang WJ, M Li, FX Wu, Y Pan (2014): Prediction of essential proteins based on overlapping essential modules, IEEE Transactions on Nanobioscience, 13(4):415-424.

111. FX Wu, L Wu, JX Wang, J Liu, LN Chen (2014): Transittability of complex networks and its application to regulatory biomolecular networks, Scientific Reports, 4, 4819; DOI:10.1038/srep04819: 1-10.

110. Y Yan, AJ Kusalik, FX Wu(2014): NovoHCD: De novo peptide sequencing from HCD spectra, IEEE Transactions on Nanobioscience, 13(2): 65-72.

109. LP Tian, ZJ Wang, A Mohammadbagheri, and FX Wu (2014): State Observer Design for Delayed Genetic Regulatory Networks Computational and Mathematical Methods in Medicine, Volume 2014, Article ID 761562, 7 pages.

108. XJ Lei, FX Wu, JF Tian and J Zhao(2014): ABC and IFC: Modules Detection Method for PPI Network, BioMed Research International: Volume 2014 (2014), Article ID 968173, 11 pages

107. J Sun, BL Chen, and FX Wu (2014): An improved peptide-spectral matching algorithm through distributed search over multiple cores and multiple CPUs, BMC Proteome Science, 12(18): 1-9.

106. LX Li, L Wu, HS Zhang, FX Wu (2014): A Fast Multiplicative Update Algorithm for Nonnegative Matrix Factorization and Its Convergence, IEEE Transactions on Neural Networks and Learning Systems, 25(10): 1855-1863.

105. BH Zhao, JX Wang WJ, M Li, FX Wu, Y. Pan (2014): Detecting Protein Complexes Based on Uncertain Graph Model, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 11(3): 486-497.

104. WW Fan, BL Chen, G Selvaraj, and FX Wu (2014): Discovering Biological Patterns from Short Time-Series Gene Expression Profiles with Integrating PPI Data, Neurocomputing, 145: 3-13.

103. M Li, WJ, Chen, JX Wang, FX Wu, and Y Pan(2014): Identifying dynamic protein complexes based on gene expression profiles and PPI Networks , BioMed Research International, Volume 2014 (2014), Article ID 375262, 10 pages.

102. W Peng, JX Wang, J Cai, L Chen, M Li, FX Wu(2014): Improving protein function prediction using domain and protein complexes in PPI networks, BMC Systems Biology, 8:35: 1-13.

101. JX Wang, XQ Peng, W Peng, and FX Wu(2014): Dynamic protein interaction network construction and applications, Proteomics, 14 (4-5): 338-342.

100. LZ Liu, FX Wu, and WJ Zhang (2014): Estimating Parameters of S-systems by an Auxiliary Function Guided Coordinate Descent Method, Systems Science and Control Engineering , 2(1): 125-134.

99. LP Tian, LZ Liu, FX Wu(2014): Nonlinear model-based analysis methods for time-course gene expression data, The Scientific World Journal,Volume 2014 (2014), Article ID 313747, 9 pages.

98. YM He, Z Zhang, XQ Peng, FX Wu and JX Wang (2013): De Novo Assembly Methods for Next Generation Sequencing Data, Tsinghua Science and Technology, 18(5): 500-514.

97. LP Tian, ZK Shi, and FX Wu (2013): Complex analysis and parameter estimation of dynamic metabolic systems, Computational and Mathematical Methods in Medicine, Volume 2013, Article ID 698341, 8 pages.

96. J Liu, XH Ye, and FX Wu (2013): Characterizing dynamic regulatory programs in mouse lung development and their association with tumourigenesis via miRNA-TF-mRNA circuits, BMC Systems Biology, 7(S2-S11):1-14

95. MK Elfaki, JX Wang, FX Wu, and LS Wang (2013): Predicting beta-turns in proteins using support vector machines with fractional polynomials, BMC Proteome Science, 11(S1:S5): 1-9.

94. QH Xiao, JX Wang, XQ Peng, and FX Wu (2013): Detecting Protein Complexes from Active Protein Interaction Networks Constructed with Dynamic Gene Expression Profiles, BMC Proteome Science, 11(S1:S20): 1-8.

93. XJ Liang, ZH Xia, XN Niu, AJ Linkz, LP Pang, and FX Wu and HW Zhang (2013): Peptide Identification Based on Fuzzy Classification and Clustering, BMC Proteome Science, 11(S1:10): 1-10.

92. BL Chen and FX Wu (2013): Identifying Protein Complexes Based on Multiple Topological Structures in PPI Networks, IEEE Transactions on Nanobioscience,12(3): 165-172.

91. BL Chen, WW Fan, J Liu, and FX Wu (2014): Identifying protein complexes and functional modules: from static PPI networks to dynamic PPI networks, Briefings in Bioinformatics, 15(2): 177-194

90. LP Tian, ZK Shi, LZ Liu, and FX Wu (2013): M-Matrix based Stability Conditions for Genetic Regulatory Networks with Time-Varying Delays and Noise Perturbations, IET Systems Biology, 7(5): 214-222.

89. MK Elfaki, Y. Sheng, JX Wang, FX Wu and M Li (2013): Predicting Beta-turns in Protein Using Kernel Logistic Regression, BioMed Research International, Volume 2013 (2013), Article ID 870372, 9 pages.

88. JX Wang, W Peng, FX Wu (2013): Computational approaches to predicting essential proteins: a survey, Proteomics Clinical Application , 7(1-2):181-192.

87. J Ren, JX Wang, M Li, FX Wu (2015): Discovering essential proteins based on PPI network and protein complex, International Journal of Data Mining and Bioinformatics, 12(1): 24-43.

86. LP Tian, LZ Liu, and FX Wu(2013): Matrix Decomposition Methods in Bioinformatics, Current Bioinformatics, 8(2): 259-266.

85. JH Shi, BL Chen, and FX Wu (2013): Unifying protein inference and peptide identification with feedback to update consistency between peptides, Proteomics, 13(2): 237-247.

84. BL Chen, JH Shi, SG Zhang, and FX Wu (2013): Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy, Proteomics, 13(2): 269-277.

83. JX Wang, J Ren, M Li, and FX Wu (2012): Identification of Hierarchical and Overlapping Functional Modules in PPI Networks, IEEE Transactions on Nanobioscience, 11(4): 386-393.

82. JX Wang, YN Huang, and FX Wu, Y Pan (2012): Symmetry compression method for discovering network motifs, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 9(6): 1776-1789.

81. JH Shi and FX Wu (2012): A feedback framework for protein inference with peptides identied from tandem mass spectra, BMC Proteome Science, 10: 68: 1-11.

80. W Peng, JX Wang, WP Wang, Q Liu, and FX Wu, Y Pan (2012): Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks, BMC Systems Biology, 6: 87.

79. LZ Liu, FX Wu, and WJ Zhang (2012): Reverse Engineering of Gene Regulatory Networks from Biological Data, WIREs Data Mining and Knowledge Discovery, 2(5):365-385

78. LP Tian, JX Wang, FX Wu (2012): Robust and Global Delay-Dependent Stability for Genetic Regulatory Networks with Parameter Uncertainties, IEEE Transactions on Nanobioscience, 11(3): 251-258

77. XJ Liang, ZH Xia, LW Zhang, and FX Wu (2012): Inference of Gene Regulatory Subnetworks from Time Course Gene Expression Data, BMC Bioinformatics, 13(S9:S3): 1-10

76. WJ Lin, JX Wang, WJ Zhang, and FX Wu (2012): An unsupervised machine learning method for assessing quality of tandem mass spectra, BMC Proteome Science , 10 (S1:S12): 1-8

75. LZ Liu, FX Wu, and WJ Zhang (2012): Inference of Biological S-system Using Separable Estimation Method and Genetic Algorithm, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 9(4): 955-965

74. LL Han, FX Wu, J Sheng, and F Ding (2012): Two recursive least squares parameter estimation algorithms for multirate multiple-input systems by using the auxiliary model, Mathematics and Computers in Simulation , 82(5): 777-789

73. FX Wu(2012): Stability and Bifurcation of Ring-Structured Genetic Regulatory Networks with Time Delays, IEEE Transactions on Circuits and Systems I (TCAS I), 59(6): 1312-1320

72. ZK Shi, FX Wu(2013): Robust Identification Method for Nonlinear Model Structures and Its Application to High Performance Aircraft, InternationalJ ournal of Systems Science, 44(6): 1040-1051.

71. LP Tian and FX Wu(2011): Stability and Bifurcations Analysis of Models for Zebrafish Somitogenesis, IEEE Transactions on Nanobioscience, 10(4): 239-247

70. Z Yuan, JH Shi, WJ Lin, BL Chen, and FX Wu(2011): Features-based deisotoping method for tandem mass spectra, Advances in Bioinformatics , Volume 2011 (2011), Article ID 210805, 12 pages

69. LP Tian, LZ Liu, QW Zhang, and FX Wu(2011): Nonlinear Model-based methods for clustering periodically expressed genes, The Scientific World JOURNAL, 11: 2051-2061

68. FX Wu (2011): Delay-Independent Stability of Genetic Regulatory Networks, IEEE Transaction on Neural Networks, 22(11): 1685-1693

67. Y Yan, SG Zhang and FX Wu (2011): Applications of Graph Theory in Protein Structure Identification, BMC Proteome Science , 9(S1:S17): 1-10

66. JH Shi and FX Wu (2011): Peptide Charge State Determination of Tandem Mass Spectra from Low-Resolution Collision Induced Dissociation, BMC Proteome Science, 9(S1:S3): 1-8

65. WJ Lin, FX Wu, JH Shi, JR Ding, and WJ Zhang (2011): An adaptive approach to denoising tandem mass spectra, Proteomics, 11 (19): 3773-3778

64. J Zhang, I McQuillan, FX Wu (2011): Speed Improvements of Peptide-Spectrum Matching Using SIMD Instructions, Proteomics, 11 (19): 3779-3785

63. FX Wu (2011): Global and Robust Stability Analysis of Genetic Regulatory Networks with Time-Varying Delays and Parameter Uncertainties, IEEE Transactions on Biomedical Circuits and Systems, 5(4): 391-398

62. L Cheng, ZG Hou, Y Lin, M Tan, WJ Zhang, and FX Wu (2011): A Recurrent Neural Network for Non-Smooth Convex Optimization Problems with an Application to the Identification of Genetic Regulatory Networks, (IEEE Transactions on Neural Networks Outstanding paper award) IEEE Transaction on Neural Networks, 22(5): 714-726

61. JR Ding, JH Shi, and FX Wu (2011): SVM-RFE based feature selection for tandem mass spectrum quality assessment, International Journal of Data Mining and Bioinformatics, 5(1): 73-88

60. AM Zou, JH Shi, JR Ding, and FX Wu (2010): Charge state determination of peptide tandem mass spectra using support vector machine (SVM), IEEE Transaction on Information Technology in Biomedicine, 14(3): 552-558

59. FX Wu, ZK Shi and L Mu (2010): Estimating parameters in the caspase activated apoptosis system, International Journal of Biomedical Engineering and Technology, 4(4): 338-354

58. FX Wu and WJ Zhang (2010): Dynamic model-based method for selecting genes from time-course expression profiles, IEEE Transaction on Information Technology in Biomedicine, 14(1): 16-22

57. FX Wu, L. Mu, and ZK Shi (2010): Estimation of Parameters in Rational Reaction Rates of Molecular Biological Systems via Weighted Least Squares, International Journal of Systems Science, 41(1): 73-80

56. C Koh, FX Wu,G Selvaraj, and AJ Kusalik(2009): Using a state-space model and location analysis to infer time-delayed gene regulatory networks, EURASIP Journal on Bioinformatics and Systems Biology, 2009, Article ID 484601: 1-14

55. JH Shi and FX Wu (2009): Protein Inference by Assembling Peptides Identified from Tandem Mass Spectra, Current Bioinformatics, 4(3): 226-233

54.XY Hang and FX Wu (2009): l1 least square for cancer diagnosis using gene expression data, Journal of Computer Science and System Biology, 2(2): 167-173.

53. JR Ding, JH Shi, and FX Wu (2009): Quality assessment of tandem mass spectra by using a weighted k-means, Clinical Proteomics, 5(1): 15-22.

52. JR Ding, JH Shi, GG Poirier, and FX Wu (2009): A novel approach to denoising ion trap tandem mass spectra, BMC Proteome Science,7:9

51.XY Hang and FX Wu (2009): Sparse Representation for the Classification of Tumors Using Gene Expression Data, Journal of Biomedicine and Biotechnology, Vol. 2009, Article ID 403689, 6 pages

50. FX Wu (2009): Delay-Independent Stability of Genetic Regulatory Networks with Time Delays, Advances in Complex Systems, 12(1): 3-19.

49. X Hu, M Ng, FX Wu, and BA Sokhansanj (2009): Mining, modeling and evaluation of sub-networks from large biomolecular networks and its comparison study, IEEE Transaction on Information Technology in Biomedicine 13(2): 184-194.

48. AM Zou, FX Wu, JR Ding, and GG Poirier (2009): Quality assessment of tandem mass spectra using support vector machine (SVM), BMC Bioinformatics 10 (S1:S49): 1-11.

47. FX Wu, ZH Xia, and L Mu (2009): Finding significantly expresses genes from time-course expression profiles, International Journal of Bioinformatics Research and Applications 5(1): 50-63.

46. FX Wu (2008): A genetic weighted k-means algorithm for clustering gene expression data, BMC Bioinformatics 9 (S6:S12): 1-11.

45. FX Wu, P Gagne, A Droit, and GG Poirier (2008): Quality assessment of peptide tandem mass spectra, BMC Bioinformatics 9 (S6:S13): 1-10.

44. FX Wu, JR Ding, and GG Poirier (2008): An approach to Assessing Peptide Mass Spectral Quality without Prior Information, International Journal of Functional Informatics and Personalised Medicine 1(2): 140-155.

43. FX Wu (2008): Gene regulatory network modelling: A state-space approach, International Journal of Data Mining and Bioinformatics 2(1): 1-14.

42. X Hu and FX Wu(equally contributed) (2007): Mining and state-space modeling and verification of sub-networks from large biomolecular networks, BMC Bioinformatics 8: 324.

41. FX Wu (2007): Inference of Gene Regulatory Networks and Its Validation, Current Bioinformatics 2(2): 139-144.

40. FX Wu,WJ Zhang, and AJ Kusalik (2006): Determination of the minimum number of microarray experiments for discovery of gene expression patterns, BMC Bioinformatics 7 (Suppl. 4): S13.

39. CH Zhang, MG Bickis, FX Wu, and AJ Kusalik (2006): Optimally-connected hidden Markov models for predicting MHC-binding peptides, Journal of Bioinformatics and Computational Biology (JBCB) 4: 959-980.

38. FX Wu, P Gagne, A Droit, and GG Poirier (2006) : RT-PSM, a real-time program for peptide-spectrum matching with statistical significance, Rapid Communications in Mass Spectrometry 20: 1199-1208.

37. FX Wu, GG Poirier, and WJ Zhang (2005): Inferring Gene Regulatory Networks with Time Delays Using Genetic Algorithm, Systems Biology 2:67-74.

36. FX Wu, WJ Zhang, and AJ Kusalik (2005): Dynamic model-based clustering for time-course gene expression data, Journal of Bioinformatics and Computational Biology (JBCB) 3: 821-836.( Abstract )

35. FX Wu, WJ Zhang, Q Li, PR Ouyang, and ZX Zhou (2005): Control of Hybrid Machines with 2-DOF for Trajectory Tracking Problems, IEEE Transactions on Control Systems Technology 13: 338-342.

34. FX Wu, WJ Zhang, and AJ Kusalik (2004): State-Space Model with Time Delays for Gene Regulatory Networks, Journal of Biological Systems (JBS) 12: 483-500.

33. FX Wu, WJ Zhang, and AJ Kusalik (2004): MCM-Based clustering for time-course gene expression data, Online Journal of Bioinformatics 5 :102-128.

32. JW Wan, WJ Zhang, D Torvi, and FX Wu (2004): An Analysis of Two-Heater Active Thermal Control Technology for Device Class Testing, IEEE Transactions on Components and Packaging Technologies Mechatronics 27: 577-584.

31. Q Li, and FX Wu (2004): Design and control of a parallel robot based on the design for control approach, Mechatronics 14: 947-964.

20. PR He, WJ Zhang, Q Li, and FX Wu (2003): A New Method for Detection of Graph Isomorphism Based on the Quadratic Form, ASME Journal of Mechanical Design 125: 640-642.

29. FX Wu, WJ Zhang, Q Li, and PR Ouyang (2002): Integrated design and PD control of High Speed Closed-loop Mechanisms, ASME Journal of Dynamics System, Measurement and Control 124: 522-527.

28. JJ Yang, FX Wu, and ZK Shi (2000): Robust H-inf fault-tolerant controller design for linear delay system with uncertainty, Control Theory and Its Application 17: 442-444.

27. FX Wu, ZK Shi, JJ Yang, GZ Dai (1997): Robust stability of linear system with delay and its application to FCS, Chinese Journal of Aeronautics 10: 222-226.

In Chinese

26.ZX Zou, FX Wu, F Li, and MA Tong (2004): A Method for Robust Control of Aircraft Attitude Using Rodrigues Parameters(in Chinese). Journal of Northwestern Polytechnical University 22(2): 175-178.

25. ZX Zhou, FX Wu, and MA Tong (2002): Output Feedback Control of Rigid Robots in Operation Space (in Chinese), Mechanical Science and Technology 21(5): 719-772.

24. ZX Zhou, FX Wu, C Gong and MA Tong (2002): Attitude Regulation of a Rigid Body Using Unit (in Chinese), Journal of Xi'an Jiaotong Universtity 36(10): 1037-1041.

23. ZX Zhou, FX Wu, and MA Tong (2002): A New stability Criterion and Stabilization for Linear System with Multiple Delays, Journal of Northwestern Polytechnical University 20(2): 160-163.

22. FX Wu, ZX Zhou, and C Gong (2001): On Feedback Control of Robot Arm with Simple Gravity Compensation (in Chinese), Mechanical Science and Technology,Vol.20(3): 336-338.

21. FX Wu,and ZK Shi (2001): On the Controller Design of a T-S Fuzzy System, Journal of Northwestern Polytechnical University 19(2): 292-295.

20. BX Wang, ZK Shi , and FX Wu (2000):A fast algorithm for determining the box-counting dimension of time series, Systems Engineering 18 (4): 68-72.

19. FX Wu, ZK Shi, and GZ Dai (2000): On robust stability of dynamic interval systems, Control Theory and Its Applications 18(1): 113-115.

18. FX Wu, ZX Zhou ZX, ZK Shi, and GZ Dai (2000): Robust control of discrete interval systems, Control and Decision, Vo1.15(4): 479-481.

17. FX Wu, ZX Zhou, and C Gong (2000): Output Feedback Control for Elastic Joint Robots, Chinese Science Digest 6(8): 1030-1032.

16. FX Wu, ZK Shi, ZX Zhou, and GZ Dai (2000): Interval model of flight dynamic systems and robust flight control, Journal of Northwestern Polytechnical University 18(3): 374-377.

15. FX Wu, ZX Zhou, ZK Shi, and GZ Dai (2000): Robust control of discrete interval systems (in Chinese), Control and Decision 15: 479-481.

14. HX Huang, ZK Shi, and FX Wu (2000): Variable structure control for a certain kind of nonlinear systems. Control Theory and Its Application 17(5): 774-776.

13. FX Wu,ZX Zhou, and C Gong (1999): An adaptive control approach of rigid body attitude, Chinese Science Digest 5(12): 1504-1506.

12. FX Wu, ZK Shi, and GZ Dai (1999): Robust control of interval systems (in Chinese), Acta Automatica Sinica 25(5): 705-708.

11. FX Wu, ZK Shi, GZ Dai (1999): Stability analysis for T-S formal fuzzy system and its application, Control and Decision 14(1): 65-68.

10. FX Wu, ZK Shi, and GZ Dai (1999): Robust stability analysis of interval systems with delay and its aircraft application, Journal of Northwestern Polytechnical University 17(2): 236-240.

9. FX Wu,ZK Shi, ZX Zhou, and GZ Dai(1999): Robust Fault-Tolerant Control for Linear Time-Varying Uncertain Systems and Its Application, Journal of Northwestern Polytechnical University 17(s): 112-115.

8. FX Wu, ZX Zhou, ZK Shi, and GZ Dai (1999): Robust stability analysis for systems with delay, Control and Decision 14(s): 506-510.

7. JJ Yang, ZK Shi, FX Wu, and GZ Dai (1999): Robust fault-tolerant control for actuator fuzzy fault of flight control system, Flight Dynamics 17(2): 25-29.

6. Yang JJ, ZK Shi, FX Wu, and GZ Dai (1999): Fault-tolerant control based fuzzy observer and its application, Journal of Northwestern Polytechnical University 17(3): 376-380.

5. FX Wu, ZK Shi, and GZ Dai (1997): On Fuzzy Modelling of flight control system and its application, Acta Aeronautica Et Astronautica Sinica 18(5): 595-598.

4. FX Wu, GZ Dai, and ZK Shi (1996): On exact linearization problem of singular nonlinear systems, Journal of Northwestern University 26(s): 21-23.

3. FX Wu (1994): Fundamental solution for thin plate problem , Mechanics and Practice 16(2): 44-47.

2. HQ Zhang, and FX Wu (1993): A general method to construct fundamental solution for shell problem , Chinese Science Bulletin 38(7): 671-672.

1. HQ Zhang, and FX Wu(1992): General solution for a class of partial differential equations and its application in theory of shells , Journal of Mechanics 24 (6): 700-707.

Refereed Conference Papers

88. BL Chen, XQ Shang, M Li, JX Wang, and FX Wu(2014): A two-step logistic regression algorithm for identifying individual-cancer-related genes, BIBM 2015: 195-200

87. W Lan, JX Wang, M Li, FX Wu , and Y Pan (2015): Predicting drug-target interaction based on sequence and structure information, 17th IFAC Symposium on System Identification SYSID 2015, IFAC-PapersOnLine , 48 (28): 12-16

86. BH Zhao, JX Wang, FX Wu , and Y Pan (2015): Predicting Protein Functions Based on Dynamic Protein Interaction Networks, ISBRA 2015: 390-401

85. BL Chen, M Li, JX Wang, FX Wu(2014): A logistic regression based algorithm for identifying human disease genes, BIBM 2014: 197-200

84. Y Yan, AJ Kusalik, FX Wu (2014): NovoPair: de novo peptide sequencing for complementary spectra pair, BIBM 2014: 150-155

83. XJ Lei, F Wang, FX Wu, AD Zhang (2014): Detecting Functional Modules in Dynamic Protein-Protein Interaction Networks Using Markov Clustering and Firefly Algorithm, BIBM 2014: 75-81

82. L Wu, Y Shen, M Li, and FX Wu (2014): Drug Target Identification Based on Structural Output Controllability of Complex Networks, ISBRA 2014: 188-199

81. XJ Ding, HH GU, Z Zhang, FX Wu, M Li (2014): Searching SNP combinations related to evolutionary information of human populations on Hapmap data, ISBRA 2014: 278-288

80. M Li, Y Lu, ZB Niu, FX Wu, Y Pan (2014): Identification of essential proteins by using complexes and interaction network, ISBRA 2014: 256-266

79. QH Xiao, XQ Peng, FX Wu (2014): A Novel Method for Identifying Essential Proteins from Active PPI Networks, ISBRA 2014: 398-399

78. Y Yan, AJ Kusalik, FX Wu (2014): NovoGMET:De Novo Peptide Sequencing using Graphs with Multiple Edge Types (GMET) for ETD/ECD Spectra, ISBRA 2014: 200-211

77. X Lei, C Ying, FX Wu(2013): Clustering PPI Networks Based on Improved Synchronization-based Hierarchical Clustering Method, ISBRA 2014: 401-403

76. BL Chen, JX Wang, FX Wu(2013): Prioritizing human disease genes by multiple data integration, IEEE BIBM 2013: 621.

75. M Li, W Chen, JX Wang, FX Wu and Y Pan(2013): Identifying dynamic protein complexes based on gene expression profile and PPI Networks, IEEE BIBMW 2013: page 5

74. X Lei, J Tian, FX Wu(2013): The Clustering Method of PPI Networks through Fuzzy and ABC Mechanism, IEEE BIBMW 2013: page 3

73. Y Yan, AJ Kusalik, FX Wu(2013): A multi-edge graph based de novo peptide sequencing method for HCD spectra, BIBM 2013: 176-181.

72. LZ Liu, FX Wu, WJ Zhang(2013): Robust Inference of Gene Regulatory Networks from Multiple Microarray Data Sets, IEEE BIBM 2013: 544-547.

71. W Peng, JX Wang, FX Wu(2013): A dividing-and-matching algorithm to detect conserved protein complexes via local network alignment, IEEE BIBM 2013: 78-81.

70. GU Ganegoda, JX Wang, FX Wu, M Li(2013): Prioritization of Candidate Genes Based on Disease Similarity and Protein's Proximity in PPI Networks, IEEE BIBM 2013: 103-108.

69. BH Zhao, JX Wang, FX Wu, Y Pan (2013): Construction of Uncertain Protein-Protein Interaction Networks and Its Application, ISBRA 2013: 286-297

68. M Elfaki, JX Wang, FX Wu (2012): A Hybrid Approach of Support Vector Machines with Logistic Regression for Beta-turn Prediction, International Workshop on Computational Proteomics, IEEE BIBM2012: 587-593

67. XJ Liang, ZH Xia, XN Niu, A Link, LP Pang, FX Wu (2012): A Fuzzy Cluster-based Algorithm for Peptide Identification, International Workshop on Computational Proteomics, IEEE BIBM2012: 602-609

66. BL Chen, JH Shi, FX Wu (2012): Not All Protein Complexes Exhibit Dense Structures in S. cerevisiae PPI network, IEEE BIBM2012:470-473

65. LZ Liu, FX Wu, WJ Zhang(2012): Alternating Weighted Least Squares Parameter Estimation for Biological S-Systems, IEEE ISB2012: 6-11.

64. LP Tian, ZK Shi, FX Wu (2012): New Global Stability Conditions for Genetic Regulatory Networks with Time-Varying Delays, IEEE ISB2012: 185-191.

63. M Elbashir, JX Wang, M Li, and FX Wu (2012): Sparse Kernel Logistic Regression for Beta-turns Prediction, IEEE ISB2012: 247-252.

62. XH Ye, J Liu, FX Wu (2012): Dynamic miRNA-TF-mRNA circuits in mouse lung development, IEEE ISB2012: 257-263.

61. LP Tian, LZ Liu, FX Wu (2012): State Estimation for Genetic Regulatory Networks, iCBBE2012, 4 pages in IEEE format on disc

60. JH Shi, BL Chen, FX Wu (2011): Improving accuracy of peptide identification with consistency between peptides, IEEE BIBM 2011: 191-196 (at the acceptance rate of ~19%)

59. XJ Liang, ZH Xia, LW Zhang, FX Wu (2011): Modeling Gene Regulatory Subnetworks from Time Course Gene Expression Data, IEEE BIBM 2011:216-221 (at the acceptance rate of ~19%)

58. LP Tian, FX Wu (2011): Delay-Dependent Stability for Genetic Regulatory Networks, IEEE BIBM 2011:197-201 (at the acceptance rate of ~19%)

57. BL Chen, Y Yan, JH Shi, SG Zhang,FX Wu (2011): Improved graph entropy-based method for detecting protein complexes, IEEE BIBM 2011: 123-126 (at the acceptance rate of ~19%)

56. BL Chen, LZ Liu, FX Wu (2011): Inferring stable gene regulatory networks from multiple time course gene expression datasets, IEEE ISB2011, 12-17

55. LP Tian, LZ Liu, FX Wu (2011): Estimating Parameters in Genetic Regulatory Networks with SUM Logic, IEEE EMBC11:1371-1374

54. LP Tian, LZ Liu, FX Wu (2011): Identification of Pseudo-Periodic Gene Expression Profiles, BIOCOMP'11, 42-46

53. LP Tian, HY Lu, FX Wu (2011): Nonlinear Model-Based Clustering for Periodically Expressed Gene Profiles, ISBRA'11 : 62-66

52. LP Tian, FX Wu (2011): Globally Delay-Independent Stability of Ring-Structured Genetic Regulatory Networks, IEEE CCECE'11, 308-311

51. J. Zhang, I McQuillan, FX Wu (2011): Parallelizing Peptide-Spectrum Scoring Using Modern Graphics Processing Units, IEEE ICCABS'11: 208-213

50. LP Tian, LZ Liu, FX Wu (2010): Parameter estimation method for Periodical Gene Identification, iCBBE2011, 4 pages in IEEE format on disc

49. S Li, RT Burton. S. Habibi, S Schoenau, and FX Wu(2010) Investigation of the Acceleration Effect on Dynamic Friction of EHA System, Bath/ASME Symposium on Fluid Power and Motion Control (FPMC 2010), Bath, UK, Sept 15-18, Paper No. N/A, (CD Rom).

48. LZ Liu, FX Wu, LL Han and WJ Zhang (2010): Structure Identification and Parameter Estimation of Biological S-systems, IEEE BIBM2010: 329-334 (at the acceptance rate of ~17%)

47. LP Tian, LZ Liu and FX Wu (2010): Detecting Nearly periodical Expressed Genes from Their Microarray Time-Course Expression, IASTED CompBio 2010: 612-619

46. FX Wu, LZ Liu and ZH Xia (2010): Identification of gene regulatory networks from time course gene expression data, IEEE EMBC2010:795-798

45. LP Tian, LZ Liu and FX Wu (2010): Parameter Estimation Method for Improper Fractional Models and Its Application to Molecular Biological Systems, IEEE EMBC2010:1477-1480

44. FX Wu (2010): Identification of Periodically Expressed Genes from Their Time-Course Expression Profiles, ISBRA10(short paper): 12-15

43. JH Shi,WJ Lin, FX Wu (2010): Statistical Analysis of Mascot Peptide Identification with Active Logistic Regression, iCBBE2010, 4 pages in IEEE format on disc

42. LP Tian, L Mu, FX Wu (2010): Iterative Linear Least Squares Method of Parameter Estimation for Linear-Fractional Models of Molecular Biological Systems, iCBBE2010, 4 pages in IEEE format on disc

41. LP Tian, L Mu, FX Wu (2010): Alternating Constraint Least Squares Parameter Estimation for S-System Models of Biological Networks, iCBBE2010, 4 pages in IEEE format on disc

40. FX Wu and L Mu (2009): Parameter estimation in rational models of molecular biological systems, IEEE EMBC2009, 3263-3266

39. JR, Ding, JH Shi and FX Wu(2009): Model based clustering for tandem mass spectrum quality assessment, IEEE EMBC2009, 6747-6750

38. XY Hang, W Dai, FX Wu and O Milenkovic(2009): Subspace pursuit for gene profile classification, IEEE GENSIPS 2009, 4 pages on disc

37. FX Wu and L Mu (2009): Separable Parameter Estimation Method for Nonlinear Biological System, iCBBE 2009, 4 pages on disc

36. JR, Ding and FX Wu(2009): Feature selection for tandem mass spectrum quality assessment via sparse logistical regression, iCBBE 2009, 4 pages on disc

35. FX Wu (2008): Detecting significantly expressed genes from time-course expression profiles and its validation, (Acceptance rate ~24%) IEEE BIBM08 : 170-175.

34. JR Ding, JH Shi, AM Zou, and FX Wu (2008): Feature selection for tandem mass spectrum quality assessment, IEEE BIBM08 :310-313.

33. FX Wu (2008): Stability and Oscillation of Genetic Regulatory Networks with Time Delays, IEEE BIBE08 Digital Object Identifier 10.1109/BIBE.2008.4696728 (6 pages).

32. Z.G. Hou, A.M. Zou, FX Wu, L Cheng, and M Tan (2008): Adaptive dynamic surface control of a class of uncertain nonlinear systems in pure-feedback form using fuzzy backstepping approach, IEEE CASE 2008 : 821-826.

31. FX Wu, L Mu, and RZ Luo (2008): Complexity analysis and optimal experimental design for parameter estimation of biological systems, IEEE CCECE'08 : 393-397.

30. FX Wu, JR Ding, and GG Poirier (2007): A framework for mass spectral quality assessment without prior information, IEEE BIBE 2007 : 1419-1423.

29. FX Wu (2007): Estimation of parameters in the linear-fractional models, IEEE EMBC2007 : 1086-1089.

28. FX Wu (2007): Stability Analysis of Genetic Regulatory Networks with Multiple Time Delays, IEEE EMBC2007 : 1387-1390.

27. X Hu, FX Wu, M Ng, and B Sokhansanj (2007): Mining and Dynamic Simulation of Sub-Networks from Large Biomolecular Networks [The best paper awards ], ICAI07: 806-813.

26. FX Wu (2007): Significance Analysis of Time-Course Gene Expression Profiles, ISBRA2007, LNBI 4463: 13-24.

25. FX Wu, AJ Kusalik, and WJ Zhang (2005): Genetic Weighted K-means for Large-Scale Clustering Problems, FLAIRS2005: 864-865.

24. FX Wu, AJ Kusalik, and WJ Zhang (2004): Genetic Algorithm for Inferring Time Delays in Gene Regulatory Networks, CSB2004: 610-611.

23. FX Wu, WJ Zhang, and AJ Kusalik(2004): State-Space Model for Gene Regulatory Networks with Time Delays, CSB2004: 454-455.

22. FX Wu, WJ Zhang, and AJ Kusalik (2004): Model-Based Clustering with Genes Expression Dynamics for Time-Course Gene Expression Data, BIBE2004: 267-274.

21. FX Wu, WJ Zhang, and AJ Kusalik (2004): MODELING GENE EXPRESSION FROM MICROARRAY EXPRESSION DATA WITH STATE-SPACE EQUATIONS, PSB2004: 581-592.

20. FX Wu, WJ Zhang, and AJ Kusalik (2003): A genetic K-means clustering algorithm applied to gene expression data, Canadian Conference on AI2003 : 520-526.

19. FX Wu, WJ Zhang, and AJ Kusalik (2003): Determination of the Minimum Sample Size in Microarray Experiments to Cluster Genes Using K-means Clustering, IEEE BIBE03: 401-406.

18. FX Wu, WJ Zhang, and AJ Kusalik (2003): An Algorithm to Reconstruct a Target DNA Sequence from Its Spectrum Connected at a Given Level, IEEE BIBE03: 201-205.

17. J Wan and Q Li, and FX Wu (2002): Integrated design and control of a closed-chain mechanism , IEEE ICARCV2002: 1349-1353.

16. PR Ouyang, WJ Zhang, and FX Wu (2002): Nonlinear PD Control for Trajectory Tracking With Consideration of the Design for Control Methodology, ICRA2002 : 4126-4131.

15. FX Wu and WJ Zhang (2001): Robust control of the aircraft attitude. I-SAIRAS, 5 pages on disc.

14. FX Wu, C Gong, and ZX Zhou (2000): Robot control without the generalized velocity measurement, the 3rd Asian Control Conference: 913-918.

13. FX Wu, ZK Shi, and ZX Zhou (2000): Stability and Stabilization for Linear System with Multiple Delays, the 3rd Asian Control Conference: 838-843.

12. FX Wu, ZK Shi, and ZX Zhou (2000): Robust stabilization for time-varying interval system, the 3rd Chinese World Congress on Intelligent Control and Automation: 3415-3418.

11. FX Wu,ZK Shi, C Gong, and GZ Dai (1998): Stability and Stabilization for Linear Systems with Multiple Delays, the 1998 International Conference on Multisource-Multisensor Information Fusion (FUSION'98), 4 pages on discs.

10. JJ Yang, ZK Shi, FX Wu, and GZ Dai(1998): Memoryless Robust Fault-Tolerant Controller Design of Linear Systems with State Delay and Parameter Uncertainty. the 1998 International Conference on Multisource-Multisensor Information Fusion (FUSION'98), 4 pages on discs.

9. HQ Zhang, and FX Wu. (1993) Mechanical method to construct the general solution for a system of partial differential equations, the 1992 International Workshop on Math. Mech.: 280-285.

In Chinese

8. FX Wu, ZX Zhou, and C Gong (2000): On Stabilization of a Rigid Robot by Dynamic Output Feedback, the Annual Chinese control and Decision Conference: 770-773.

7. FX Wu, ZK Shi, and GZ Dai (1999): Stability analysis for a class of fuzzy system, the Annual Chinese Control and Decision Conference: 505-508.

6. FX Wu, ZK Shi, and GZ Dai (1998): Robust observer design for a class of nonlinear systems with delays, the Annual Chinese Control and Decision Conferenc: 323-326.

5. FX Wu, ZK Shi, JJ Yang, and GZ Dai (1997): Relations amongst linearized systems of singular nonlinear system, the Annual Chinese Control and Decision Conference: 38-41.

4. FX Wu and GZ Dai GZ (1996): Deconcentration stabilization of nonlinear inter-connected systems, the annual Chinese Control and Decision Conference: 46-48.

3. FX Wu, ZK Shi, and GZ Dai (1996): A New Solution to the Riccati Equation. Collections of papers in Modern Science and Technology, Northwestern Polytechnical University Press, pp: 146-150.

2. FX Wu and GZ Dai (1996): On Linearization of Singular Nonlinear System, the Annual Chinese Control Conference: 382-384.

1. HQ Zhang, and FX Wu. (1992) The computational differential algebraic geometrical method for constructing the fundamental solution of partial differential equations, Proc.3rd Chinese Congress of Finite Element Method : 183-191.

Books and Book Chapters

4. JH Shi and FX Wu (2010): Assigning probabilities to Mascot peptide identification using logistic regression. Advances in Computational Biology, Springer,pp:229-236

3. Q Li and FX Wu (2002): Design and control of a parallel robot based on the design for control approach. Mechatronics and Machine Vision 2002: Current Practice, Edited by R. S. Bradbeer and J.Billingsley, Research Studies Press Limited, U.K. Sept. 2002, pp:145-152.

2. ZK Shi, FX Wu, P Wang, and HN Ruan (2003): Robust Control Theory. ISBN 7-118-03029-5, National Defence Industry Press, January 2003

1. WG Zhang, JC Lu, and FX Wu (2000): Introduction to Advanced Control Theories and Its Applications. ISBN 7-5612-1235-6, Northwestern Polytechnical University Press, April 2000.

Editors od special issues and proceedings

17. FX Wu M Li, JS Ruan, F Luo (2014): Systems Biology Approaches to Mining High Throughput Biological Data Biomed Research International , 2015 Article ID 504362, 2 pages.

16. FX Wu and XH Hu(2014): Selected papers from ISBRA2014 BMC Genomics , 16(S3).

15.M Li, JX wang FX Wu(2015): Selected papers from ISBRA2014 BMC Bioinformatics , 16 (S5).

14. FX Wu,JX Wang, LN Chen, R Ahajj (2014): Complex Networks and Human Diseases Biomed Research International 2014 Article ID 363717, 2 pages.

13. FX Wu and XH Hu(2014): Selected papers from BIBM 2013 BioMedical Engineering OnLine , 13(S2).

12. FX Wu and XH Hu(2014): Selected papers from BIBM 2013 BMC Medical Genomics , 7 (S2).

11. FX Wu and XH Hu(2014): Selected papers from BIBM 2013 BMC Bioinformatics , 15 (S12).

10. FX Wu and XH Hu(2014): Selected papers from BIBM 2013 BMC Systems Biology , 8 (S3).

9. FX Wu and JX Wang, XH Hu(2013): Selected papers from BIBM 2012 , Proteome Science , 11 (S1).

8. FX Wu with other 40(2012): Proceedings of BIBM 2012 Workshops, 2012 BIBMW

7. FX Wu and H. Ressom (2012): Selected papers from BIBM 2011, Proteome Science , 10 (S1)

6. FX Wu,H. Ressom and MJ Dunn (2013): Focus on Bioinformatics in Proteomics, Proteomics,13(2):219-220

5. FX Wu and other 6 (2011): Proceedings of BIBM 2011, 2011 BIBM

4. FX Wu and X Hu, and B. Ma (2011): Selected papers from BIBM 2010, Proteome Science,9(S1)

3. FX Wu and GG Poirier(2011): Focus on Computational Proteomics, Proteomics, 11 (19): 3771-3772

2. FX Wu and J Huan(2011): Special Focus on Bioinformatics and Systems Biology, IEEE/ACM Transactions on Computationsl Biology and Bioinformatics , 8(2): 292-293

1. FX Wu with other 40(2010): Proceedings of BIBM 2010 Workshops, 2010 BIBMW


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